Simply on the ground of a _de facto_ political independence, the southern dioceses of the Protestant Episcopal Church, following the principles and precedents of 1789, organized themselves into a "Church in the Confederate States." One of the southern bishops, Polk, of Louisiana, accepted a commission of major-general in the Confederate army, and relieved his brethren of any disciplinary questions that might have arisen in consequence by dying on the field from a cannon-shot. With admirable tact and good temper, the "Church in the United States" managed to ignore the existence of any secession; and when the alleged _de facto_ independence ceased, the seceding bishops and their dioceses dropped quietly back into place without leaving a trace of the secession upon the record.
The southern organizations of the Methodists and Baptists were of twenty years' standing at the close of the war in 1865. The war had abolished the original cause of these divisions, but it had substituted others quite as serious. The exasperations of the war, and the still more acrimonious exasperations of the period of the political reconstruction and of the organization of northern missions at the South, gendered strifes that still delay the reintegration which is so visibly future of both of these divided denominations.
At the beginning of the war one of the most important of the denominations that still retained large northern and southern memberships in the same fellowship was the Old-School Presbyterian Church; and no national sect had made larger concessions to avert a breach of unity. When the General Assembly met at Philadelphia in May, 1861, amid the intense excitements of the opening war, it was still the hope of the habitual leaders and managers of the Assembly to avert a division by holding back that body from any expression of sentiment on the question on which the minds of Christians were stirred at that time with a profound and most religious fervor. But the Assembly took the matter out of the hands of its leaders, and by a great majority, in the words of a solemn and temperate resolution drawn by the venerable and conservative Dr. Gardiner Spring, declared its loyalty to the government and constitution of the country. With expressions of horror at the sacrilege of taking the church into the domain of politics, southern presbyteries one after another renounced the jurisdiction of the General Assembly that could be guilty of so shocking a profanation, and, uniting in a General Assembly of their own, proceeded with great promptitude to make equally emphatic deliverances on the opposite side of the same political question.[354:1] But nice logical consistency and accurate working within the lines of a church theory were more than could reasonably be expected of a people in so pitiable a plight. The difference on the subject of the right function of the church continued to be held as the ground for continuing the separation from the General Assembly after the alleged ground in political geography had ceased to be valid; the working motive for it was more obvious in the unfraternal and almost wantonly exasperating course of the national General Assembly during the war; but the best justification for it is to be found in the effective and useful working of the Southern Presbyterian Church. Considering the impoverishment and desolation of the southern country, the record of useful and self-denying work accomplished by this body, not only at home, but in foreign fields, is, from its beginning, an immensely honorable one.