The 2003 NCAA Division II Men's Soccer Championship was the 32nd annual tournament held by the NCAA to determine the top men's Division II college soccer program in the United States.
On the strength of Leon Jackson's late 2nd half goal Lynn (20-0-1) defeated Chico State in the tournament final, 2–1. The final and semi-finals were played at the Virginia Beach Sportsplex in Virginia Beach, Virginia
This was the first national title for the Fighting Knights, who were coached by Shaun Pendleton, and had previously been finalists in 1997.