The Chagatai Khans were the monarchs of the Chagatai Khanate from Chagatai Khan's inheritance of the state in 1227 to their removal from power by the Dzungars and their vassals in 1687. The power of the Chagatai Khans varied; from its beginning, the khanate was one of the weakest of the Mongol states and often its rulers were merely figureheads for ambitious conquerors (see Kaidu and Timur).

Note: The following list is incomplete. It excludes several collateral lines that ruled over minor territories and were relatively unimportant.

List of Chagatai khans

Khans of the Chagatai Khanate

Blue rows signifies nominal rule.

List of Chagatai khans

Khans of the Western Chagatai Khanate and the Eastern Chagatai Khanate (Moghulistan)

List of Chagatai khans

Transoxiana remained in the hands of Timur and his successors. For a continued list of rulers of Moghulistan see below.

Khans of Moghulistan

Green shaded row signifies rule of usurper.

Khans of Western Moghulistan (Yarkent) and Khans of Eastern Moghulistan (Turpan)

Said Khan successors (Yarkent Khanate)

Abdurashid Khan (in Aksu 1521–1533) 1533–1560, son of Sultan Said Khan

Abdul Karim Khan (Yarkand) 1560–1591, eldest son of Abdurashid Khan