During the 20th century, the NCAA had no playoff for the major college football teams in the University Division, later known as Division I-A. The NCAA did recognize a national champion based upon the final results of "wire service" (AP and UPI) polls. The "writers' poll" by Associated Press (AP) was the most popular, followed by the "coaches' poll" by United Press International) (UPI). Prior to 1965, both services issued their final polls at the close of the regular season, but before teams competed in bowl games. For the 1965 season, the AP took its final poll after the postseason games, an arrangement made permanent in 1968. The Associated Press presented the "AP Trophy" to the winner.

The AP poll in 1965 consisted of the votes of 55 sportswriters, each of whom would give their opinion of the ten best teams. Under a point system of ten points for first place, nine for second, etc., the "overall" ranking was determined. In the preseason poll for 1965, the writers cast first place votes for nine different teams, and the range of points between the highest six finishers ranged from 252 to 311 points. Nebraska was first, followed by Texas, Notre Dame, Michigan, Alabama, and Arkansas. As the regular season progressed, new polls were issued weekly on Mondays.

1965 NCAA University Division football season

At the end of the regular season, Michigan State, Arkansas, and Nebraska were all unbeaten at 10–0. As champions of their respective conferences (Big Ten, Southwest, and Big Eight), they played in three separate bowl games (Rose, Cotton, and Orange) on New Year's Day. Arkansas and Michigan State lost during the day, and Alabama defeated Nebraska at night in Miami. In the final poll, taken after the bowls, Alabama was crowned the national champion by the Associated Press. The Crimson Tide had been first in both final polls at the end of the 1964 regular season and crowned as national champions, but lost the Orange Bowl.

1965 NCAA University Division football season

In addition to 1964 and 1965, the UPI national champions in 1970 and 1973 also lost their respective bowl games. Beginning with the 1974 season, the UPI released its final poll after the bowls.

1965 NCAA University Division football season

Rule changes

Free substitution is now permitted only on changes of possession, which brought back the two-platoon system to college football. A two-inch (5 cm) kicking tee was allowed for kickoffs; this was reduced to one-inch (2½ cm) in 2006.

Conference and program changes

The New England Football Conference, now a Division III conference, began football play in 1965.

The AP Regular Season Poll

In the preseason poll released on September 13, the top five teams were from different conferences. First place was the Nebraska Cornhuskers (Big 8) followed by Texas (Southwest), independent Notre Dame, Michigan of the Big Ten and Alabama from the Southeastern Conference (SEC). Arkansas, the SWC rival to Texas, was No. 6, followed by USC from the AAWU (later Pacific-8, Pac-10, and now Pac-12).

September

In Week One (September 18) No. 5 Alabama and No. 7 USC both fell out of the Top Ten. USC played Minnesota to a 20–20 tie on a Friday night game in Los Angeles while Alabama narrowly lost to Georgia, 18–17. No. 1 Nebraska beat Texas Christian (TCU) at home, 34–14. No. 2 Texas shut out Tulane 31–0 in a game which was shifted from New Orleans to Austin due to the devastation of Hurricane Betsy across the Crescent City. No. 3 Notre Dame crushed California 48–6 at Berkeley, and No. 4 Michigan won 31–24 at North Carolina. No. 6 Arkansas beat Oklahoma State 28–14. Following its big win, Notre Dame rose to No. 1 in the next poll, Nebraska and Texas fell to 2nd and 3rd, Michigan stayed at No. 4 and Arkansas was No. 5. In a matchup which would later have national championship implications, Michigan State defeated UCLA 13–3 at East Lansing.

On September 25, No. 1 Notre Dame stayed in Indiana as it lost to No. 6 Purdue 25–21 at West Lafayette. No. 2 Nebraska won 27–17 over Air Force in Colorado Springs, and No. 3 Texas beat Texas Tech 33–7. No. 4 Michigan barely won over unranked California 10–7 and No. 5 Arkansas defeated Tulsa 20–12. No. 7 LSU won 42–14 over Rice. In the next poll, Texas, Purdue and Nebraska had had 15, 14 and 13 first place votes in a tight race for No. 1, No. 2 and No. 3. Arkansas rose to No. 4, while LSU placed fifth. Michigan State entered the poll at No. 9 with a 23−0 shutout of Penn State.